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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 8017 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OL870856.1 nt Binary vector pZH95, complete sequence. 12317 bp Binary vector pZH95 QL-ELE-00-001 194 bp View
OL999596.1 nt MAG: Cauliflower mosaic virus isola... 501 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
OM228708.1 nt Binary Vector pYL-PV4MF7, complete ... 12579 bp Binary Vector pYL-PV4MF7 QL-ELE-00-001 195 bp View
OM228709.1 nt Binary Vector pYL-PV4MF8, complete ... 12345 bp Binary Vector pYL-PV4MF8 QL-ELE-00-001 195 bp View
OM228710.1 nt Binary Vector pYL-PV4MF9, complete ... 12049 bp Binary Vector pYL-PV4MF9 QL-ELE-00-001 195 bp View
OM372495.1 nt Vector pLX-TRV1, complete sequence. 10774 bp Vector pLX-TRV1 QL-ELE-00-001 195 bp View
OM372496.1 nt Vector pLX-TRV2, complete sequence. 6241 bp Vector pLX-TRV2 QL-ELE-00-001 195 bp View
OM397417.1 nt Synthetic construct 5-enolpyruvylsh... 2075 bp synthetic construct QL-ELE-00-001 194 bp View
ON092626.1 nt Moss mCitrine knock-in vector, comp... 6023 bp Moss mCitrine knock-in vector QL-ELE-00-001 195 bp View
ON092627.1 nt Moss mClover3 knock-in vector, comp... 6023 bp Moss mClover3 knock-in vector QL-ELE-00-001 195 bp View
OP142292.1 nt Vector pTPGmY, complete sequence. 10333 bp Vector pTPGmY QL-ELE-00-001 195 bp View
OP142293.1 nt Vector pTPGmYG, complete sequence. 12189 bp Vector pTPGmYG QL-ELE-00-001 195 bp View
OP757693.1 nt Cloning vector pMDC43-VirE2, comple... 11668 bp Cloning vector pMDC43-VirE2 QL-ELE-00-001 195 bp View
OP947586.1 nt Cauliflower mosaic virus isolate DS... 8028 bp Cauliflower mosaic virus QL-ELE-00-001 195 bp View
OQ601558.1 nt Vector pTLAB21_Bs314EBE_avrGf2, com... 14436 bp Vector pTLAB21_Bs314EBE_avrGf2 QL-ELE-00-001 195 bp View
OR636129.1 nt Vector pEAQHT/35s:p19:xGluchy:mCher... 10698 bp Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT QL-ELE-00-001 195 bp View
OR636129.1 nt Vector pEAQHT/35s:p19:xGluchy:mCher... 10698 bp Vector pEAQHT/35s:p19:xGluchy:mCherry:NosT QL-ELE-00-001 195 bp View
OR672127.1 nt Cloning vector pTPH-NmYG, complete ... 11617 bp Cloning vector pTPH-NmYG QL-ELE-00-001 195 bp View
OR695066.1 nt Synthetic construct clone pEAQHT/35... 7187 bp synthetic construct QL-ELE-00-001 195 bp View
OR763841.1 nt Cloning vector pUQC10196, complete ... 6132 bp Cloning vector pUQC10196 QL-ELE-00-001 195 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.