Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag tggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| HG996784.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG997383.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG997597.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG998232.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG998358.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| HG998499.1 | nt | Oryza rufipogon genome assembly, or... | 134539 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| BX569685.1 | nt | Oryza sativa genomic DNA, chromosom... | 145980 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| OV049821.1 | nt | Oryza rufipogon genome assembly, or... | 134539 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049845.1 | nt | Oryza rufipogon genome assembly, or... | 134538 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049881.1 | nt | Oryza rufipogon genome assembly, or... | 134538 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049884.1 | nt | Oryza rufipogon genome assembly, or... | 134539 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049889.1 | nt | Oryza rufipogon genome assembly, or... | 134538 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049913.1 | nt | Oryza rufipogon genome assembly, or... | 134539 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049954.1 | nt | Oryza rufipogon genome assembly, or... | 134538 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| AP014960.1 | nt | Oryza sativa Japonica Group DNA, ch... | 35502694 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| CP132238.1 | nt | Oryza sativa Japonica Group cultiva... | 36078568 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| AL731605.3 | nt | Oryza sativa genomic DNA, chromosom... | 167113 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.