JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

572 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51    cctactaagt gagaactttc aaattcagag aaaccctgga attaataaaa
101   atgggcaatc ctgagccaaa tcctcttttt cgaaaacaaa gattaaagga
151   aaataaaaaa gagggatagg tgcagagact caatggaagc tgttctaaca
201   aatggagttg atcgcgttgg tagaggaatc ttttcatcaa aacttcagaa
251   aggatgaaag ataaacgtat atacatatgc atatgtactg aaatcctata
301   tcaaaataaa atgcttattt tttctttcta tgaaaaatag aagaatcgtt
351   gcgaatcgat tccacattcc acattgaata aaaaatttca tattcattga
401   tcaaatcatt tactccatag tctaatagat cttgtgaata actgattaat
451   caggcaagaa taaagataga gtcccattct acatgtcaat accgacaaca
501   ataatgaaat ttatagtacg aggaaaatcc gtcgacttta taaatcgtga
551   gggttcaagt ccctctatcc cc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
MF926138.1	nt	Ardisia hanceana voucher Wang200718...	901 bp	Ardisia hanceana	QL-PLN-00-007	572 bp	View
MF926140.1	nt	Ardisia japonica voucher Wang200729...	901 bp	Ardisia japonica	QL-PLN-00-007	572 bp	View
MF926142.1	nt	Ardisia linangensis voucher Wang200...	901 bp	Ardisia linangensis	QL-PLN-00-007	572 bp	View
MF926153.1	nt	Ardisia polysticta voucher Wang2007...	901 bp	Ardisia polysticta	QL-PLN-00-007	572 bp	View
MF926154.1	nt	Ardisia porifera voucher Zheng822 t...	898 bp	Ardisia porifera	QL-PLN-00-007	572 bp	View
MF926158.1	nt	Ardisia purpureovillosa voucher Wan...	892 bp	Ardisia purpureovillosa	QL-PLN-00-007	572 bp	View
MF926128.1	nt	Ardisia crenata voucher Wang2007299...	898 bp	Ardisia crenata	QL-PLN-00-007	572 bp	View
MF926159.1	nt	Ardisia pusilla voucher Wang2007111...	892 bp	Ardisia pusilla	QL-PLN-00-007	572 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.