Amplicon details

Amplicon:

572 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tagtatggaa
51    cctactaagt gagaactttc aaattcagag aaaccctgga attaataaaa
101   atgggcaatc ctgagccaaa tcctcttttt cgaaaacaaa gattaaagga
151   aaataaaaaa gagggatagg tgcagagact caatggaagc tgttctaaca
201   aatggagttg atcgcgttgg tagaggaatc ttttcatcaa aacttcagaa
251   aggatgagag ataaacgtat atacatatgc atatgtactg aaatcctata
301   tcaaaataaa atgcttattt tttctttcta tgaaaaatag aagaatcgtt
351   gcgaatcgat tccacattcc acattgaata aaaaatttca tattcattga
401   tcaaatcatt tactccatag tctaatagat cttgtgaata actgattaat
451   caggcaagaa taaagataga gtcccattct acatgtcaat accgacaaca
501   ataatgaaat ttatagtacg aggaaaatcc gtcgacttta taaatcgtga
551   gggttcaagt ccctctatcc cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF926120.1 nt Ardisia attenuata voucher Xia et al... 892 bp Ardisia attenuata QL-PLN-00-007 572 bp View
MF926162.1 nt Ardisia solanacea voucher Wang20072... 893 bp Ardisia solanacea QL-PLN-00-007 572 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.