Amplicon details

Amplicon:

173 bp
1     ggatctcctg tcatctcacc ttgctcctgc cgagaaagta tccatcatgg
51    ctgatgcaat gcggcggctg catacgcttg atccggctac ctgcccattc
101   gaccaccaag cgaaacatcg catcgagcga gcacgtactc ggatggaagc
151   cggtcttgtc gatcaggatg atc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
JF811683.1 nt Binary vector pPIPRA561, complete s... 10636 bp Binary vector pPIPRA561 QL-ELE-00-003 173 bp View
JF920304.1 nt HaloTag CMV-neo vector pHTN, comple... 6143 bp HaloTag CMV-neo vector pHTN QL-ELE-00-003 173 bp View
JF920305.1 nt HaloTag CMV-neo vector pHTC, comple... 6185 bp HaloTag CMV-neo vector pHTC QL-ELE-00-003 173 bp View
AB609713.1 nt Gene trap vector pCMT-SAhygpA-NP21 ... 10437 bp Gene trap vector pCMT-SAhygpA-NP21 QL-ELE-00-003 173 bp View
AB609714.1 nt Gene trap vector pCMT-SAhygpA-NP22 ... 10439 bp Gene trap vector pCMT-SAhygpA-NP22 QL-ELE-00-003 173 bp View
AB609715.1 nt Tol2 transposon-based gene trap vec... 8148 bp Tol2 transposon-based gene trap vector pT2F2-SAhygpA-NP21 QL-ELE-00-003 173 bp View
JN948661.1 emblreltgn Mus musculus targeted KO-first, con... 38597 bp Mus musculus QL-ELE-00-003 173 bp View
AB609717.1 nt Tol2 transposon-based gene trap vec... 8156 bp Tol2 transposon-based gene trap vector pT2F2-SAhygpA-NP21-Rev QL-ELE-00-003 173 bp View
JN947788.1 nt Mus musculus targeted non-condition... 38962 bp Mus musculus QL-ELE-00-003 173 bp View
JN947789.1 nt Mus musculus targeted non-condition... 38751 bp Mus musculus QL-ELE-00-003 173 bp View
LC085659.1 nt Gene-trapping transposon vector pdD... 13249 bp Gene-trapping transposon vector pdDT-01 QL-ELE-00-003 173 bp View
JN944949.1 nt Mus musculus targeted KO-first, con... 38618 bp Mus musculus QL-ELE-00-003 173 bp View
JN944951.1 nt Mus musculus targeted KO-first, con... 37963 bp Mus musculus QL-ELE-00-003 173 bp View
JN944952.1 nt Mus musculus targeted non-condition... 39471 bp Mus musculus QL-ELE-00-003 173 bp View
JN944953.1 nt Mus musculus targeted KO-first, con... 37780 bp Mus musculus QL-ELE-00-003 173 bp View
JN944954.1 nt Mus musculus targeted non-condition... 37995 bp Mus musculus QL-ELE-00-003 173 bp View
JN944955.1 nt Mus musculus targeted KO-first, con... 38017 bp Mus musculus QL-ELE-00-003 173 bp View
JN944956.1 nt Mus musculus targeted KO-first, con... 39147 bp Mus musculus QL-ELE-00-003 173 bp View
JN948662.1 emblreltgn Mus musculus targeted non-condition... 38297 bp Mus musculus QL-ELE-00-003 173 bp View
NRN_CQ821461 nrnl1 Sequence 17 from Patent EP1428886. 7235 bp unidentified QL-ELE-00-003 173 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.