Amplicon details

Amplicon:

590 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaacaat
101   gggcaatcct gagccaaatc ctgtttttcg aaaaccaaga agagttcaga
151   aagagaaagg aagaaaagga taggtgcaga gactcaacgg aagctgttct
201   aacaaatgga gttgacgaca tttcgtttcg ttagtaaagg aatctttcca
251   tcgaaactcc agaaaagaaa ggattaagga tgaacatata tatgtactga
301   aatattattt caattgatta gaccagacag acccaaaatc cctatttttt
351   aatatttata tgacaaatga aagatgtgaa tagattccaa gttgaagaaa
401   gaatcgaata tttattgatc aaatcattca ctccatccta gtctgataga
451   tcttttgaag aactgattaa tcggacgaga ataaagatag agtcccattc
501   tacatgtcaa taccgacaac aatgaaattt atagtaagag gaaaatccgt
551   cgactttaga aatcgtgagg gttcaagtcc ctctatcccc  

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF430747.1 nt Hoffmannseggia glauca chloroplast t... 991 bp Hoffmannseggia glauca QL-PLN-00-007 590 bp View
JX219459.1 nt Hoffmannseggia glauca voucher CORD:... 981 bp Hoffmannseggia glauca QL-PLN-00-007 590 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.