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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 616 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101   gggcaatcct gagccaaatc ccttttttga aaaaacaagt ggttctcaaa
151   ctagaaccca aatgaaaagg ataggtgcag agactcaatg gaagctattc
201   taacgaatcg aggtgtaatt acgttgtgtt ggtaatgaaa ctccctctaa
251   atttgagaaa gaagggcttt atacatctaa tacacacgta tagatactga
301   catagcaaac gattaatcac agaacccata tcataatata ggttctttat
351   ttatttttta gaatgaaatt aggaatgatt atgaaataga aaattctgaa
401   ttttgattag aattattgtg aatccattcc actcgaatat tgagtaatca
451   aatccttcaa ttcattgttt ttgagatctt ttaaaaagag gattaatcgg
501   acgaggataa agagagagtc ccattctaca tgtcaatact gacaacaatg
551   aaatttctag taaaaggaaa atccgtcgac tttataagtc gtgagggttc
601   aagtccctct atcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN781009.1 nt Eragrostis tef isolate T14-1 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781010.1 nt Eragrostis tef isolate T16-1 plasti... 134358 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781011.1 nt Eragrostis tef isolate t10 chloropl... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781012.1 nt Eragrostis tef isolate T44-1 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781014.1 nt Eragrostis tef isolate t116 chlorop... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781015.1 nt Eragrostis tef isolate T68-2 plasti... 134349 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781016.1 nt Eragrostis tef isolate t101 chlorop... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781017.1 nt Eragrostis tef isolate T50-1 plasti... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781018.1 nt Eragrostis tef isolate t4 chloropla... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780989.1 nt Eragrostis tef isolate T34-1 plasti... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN780997.1 nt Eragrostis tef isolate T93-1 plasti... 134355 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781005.1 nt Eragrostis tef isolate t45 chloropl... 134351 bp Eragrostis tef QL-PLN-00-007 616 bp View
MN781013.1 nt Eragrostis tef isolate T21-2 plasti... 134350 bp Eragrostis tef QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.