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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 567 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ctatctaaaa ttccgaaagg
251   ataaaatgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301   attaatgacg actcgactga atctgtattt tttatataaa aacggaagaa
351   ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401   aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451   gacgagaata aagatagagt cccgttctac atgtcaatgt cggcaacaat
501   gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815534.1 nt Hyperacanthus sp. Razakamalala RZK ... 1715 bp Hyperacanthus sp. Razakamalala RZK 6443 QL-PLN-00-007 567 bp View
KJ815535.1 nt Hyperacanthus sp. Bremer et al. 512... 1697 bp Hyperacanthus sp. Bremer et al. 5123 QL-PLN-00-007 567 bp View
KJ815536.1 nt Hyperacanthus sp. Razafimandimbison... 1660 bp Hyperacanthus sp. Razafimandimbison et al. 1154 QL-PLN-00-007 567 bp View
KJ815538.1 nt Hyperacanthus mandenensis voucher K... 1715 bp Hyperacanthus mandenensis QL-PLN-00-007 567 bp View
KJ815540.1 nt Hyperacanthus poivrei voucher Razaf... 1707 bp Hyperacanthus poivrei QL-PLN-00-007 567 bp View
KJ815541.1 nt Hyperacanthus sp. Razafimandimbison... 1703 bp Hyperacanthus sp. Razafimandimbison et al. 1008 QL-PLN-00-007 567 bp View
KJ815542.1 nt Hyperacanthus sp. Razafimandimbison... 1669 bp Hyperacanthus sp. Razafimandimbison et al. 1135 QL-PLN-00-007 567 bp View
KJ815539.1 nt Hyperacanthus perrieri voucher Raza... 1718 bp Hyperacanthus perrieri QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.