Amplicon details

Amplicon:

581 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct taatatggaa
51    acctactaag tgataacttt caaattcagg gaaaccctgg aataaaaaat
101   gggcaatcct gagccaaatc ctgttttccg aaaaccagaa aacgctaata
151   aaaaaaggat aggtgcagag actcaatgga agctgttcta acaaaaacaa
201   atggagttga ctatgttacg atgttaaacg aatccttcca tcaaaactcc
251   agaacccgaa aggatgaagg ataaacctat atacataggt actgaaatat
301   tatatcaaat gattaatgat ggctcgaatc tctatttttt tatatgaaaa
351   atgaaagaat tgttgtaaat cgattccaag ttgaagaaag aaaagaatcg
401   aatattcatt gatcaaatca ttcactccat agtccgatag atcatttgaa
451   gaactgatta atcggacgag aataaagaga gagtcccatt ctacatgtca
501   atatcgacag caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551   aaatcgtgag ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KT597248.1 nt Tetrastigma sp. A PBP-2017 isolate ... 1022 bp Tetrastigma sp. A PBP-2017 QL-PLN-00-007 581 bp View
KT597273.1 nt Tetrastigma sp. A PBP-2017 isolate ... 1022 bp Tetrastigma sp. A PBP-2017 QL-PLN-00-007 581 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.