Amplicon details

Amplicon:

569 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggtaat cctgagccaa atcccgtttt ctcaaaacaa aggtaaaggt
151   tcaaaaaacg aaaaaaagga taggtgcaga gactcaatgg aagctgttct
201   aacaaatgga gttgattgcc ctggtagagg catctttgca tggaaacttc
251   cgaaaggatg aaggataaat gtatctattg aatactatat cattaatgat
301   taatgatggt ccgaatctgt atttgtattt tttaatatga aaaatggaag
351   aattggtgtg aattgattcc acattgaaga aaaaatcgaa tattcagtca
401   gcaaatgatt cactccatag tccaatagat cttttaaaga actgattaat
451   cggacgagaa taaagataga gtcccattct acatgtcaat accggcaaca
501   atgaaattta tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg
551   ttcaagtccc tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR699043.1 nt Prostanthera althoferi subsp. altho... 152942 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699050.1 nt Prostanthera althoferi subsp. altho... 152946 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699051.1 nt Prostanthera althoferi subsp. altho... 152928 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View
OR699053.1 nt Prostanthera althoferi subsp. altho... 152937 bp Prostanthera althoferi subsp. althoferi QL-PLN-00-007 569 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.