European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 552 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcga tggaagttgt tctaacaaat
201   ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatccg tattttttat atgaaaacgg aagagttggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaag
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ874949.1 nt Pachystigma gillettii chloroplast t... 1720 bp Vangueria gillettii QL-PLN-00-007 552 bp View
AJ874959.1 nt Rytigynia induta chloroplast trnT-t... 1724 bp Rytigynia induta QL-PLN-00-007 552 bp View
AJ620150.1 nt Multidentia concrescens chloroplast... 1718 bp Multidentia concrescens QL-PLN-00-007 552 bp View
AJ620166.1 nt Pygmaeothamnus zeyheri chloroplast ... 1783 bp Pygmaeothamnus zeyheri QL-PLN-00-007 552 bp View
AJ620170.1 nt Robynsia glabrata chloroplast trnT-... 1726 bp Robynsia glabrata QL-PLN-00-007 552 bp View
AJ620183.1 nt Vangueriopsis cf. longiflora Luke 8... 1726 bp Vangueriopsis cf. longiflora Luke 8316 QL-PLN-00-007 552 bp View
FN386341.1 nt Pygmaeothamnus sp. Bremer et al. 43... 1803 bp Pygmaeothamnus sp. Bremer et al. 4356 QL-PLN-00-007 552 bp View
JQ958276.1 nt Cuviera schliebenii voucher Burrows... 1697 bp Cuviera schliebenii QL-PLN-00-007 552 bp View
JQ958277.1 nt Multidentia crassa voucher Dessein ... 1707 bp Multidentia crassa QL-PLN-00-007 552 bp View
JQ958279.1 nt Pygmaeothamnus zeyheri voucher Lema... 1756 bp Pygmaeothamnus zeyheri QL-PLN-00-007 552 bp View
JQ958280.1 nt Cuviera semseii voucher Burrows & B... 1697 bp Cuviera semseii QL-PLN-00-007 552 bp View
JQ958282.1 nt Vangueria cinerascens voucher Desse... 1693 bp Vangueria cinerascens QL-PLN-00-007 552 bp View
KF488289.1 nt Multidentia concrescens voucher Ver... 1685 bp Multidentia concrescens QL-PLN-00-007 552 bp View
KF488290.1 nt Multidentia crassa voucher Verstrae... 1692 bp Multidentia crassa QL-PLN-00-007 552 bp View
KF488291.1 nt Multidentia crassa voucher Verstrae... 1685 bp Multidentia crassa QL-PLN-00-007 552 bp View
KF488320.1 nt Vangueria cinerascens voucher Verst... 1685 bp Vangueria cinerascens QL-PLN-00-007 552 bp View
AJ874947.1 nt Multidentia crassa chloroplast trnT... 1680 bp Multidentia crassa QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.