Amplicon details |
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Amplicon: |
556 bp | |
1 cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa 51 acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa 101 aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa 151 agtgaaaaag ggataggtgc agagactcga tggaagttgt tctaacaaat 201 ggagttggct gcgttagtaa agaaatcttt ccatcgaaaa ttccgaaagg 251 ataaaacaaa cgtatacgta ttcaatacta tatcaaatga ttaatgacga 301 ctcgactgaa tccgtatttt ttatatgaaa acggaagagt tggtgtgaat 351 agattccaca ttgaagaaag aatcgaatat tcattgatta aatgattcac 401 tccatagtct gatagatctt ttcaagaatt gattaatcgg acgagaataa 451 agatagagtc ccgttctaca tgtcaatgtc ggcaacaatg aaatttatag 501 taagaggaaa atccgtcgac tttaaaaatc gtgagggttc aagtccctct 551 atcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| AJ874946.1 | nt | Lagynias pallidiflora chloroplast t... | 1735 bp | Vangueria pallidiflora | QL-PLN-00-007 | 556 bp | View |
| AJ874950.1 | nt | Pachystigma latifolium chloroplast ... | 1739 bp | Vangueria latifolia | QL-PLN-00-007 | 556 bp | View |
| AJ874975.1 | nt | Vangueria proschii chloroplast trnT... | 1730 bp | Vangueria proschii | QL-PLN-00-007 | 556 bp | View |
| AJ874976.1 | nt | Vangueria randii chloroplast trnT-t... | 1714 bp | Vangueria randii | QL-PLN-00-007 | 556 bp | View |
| AJ874978.1 | nt | Vangueria volkensii chloroplast trn... | 1729 bp | Vangueria volkensii | QL-PLN-00-007 | 556 bp | View |
| AJ620146.1 | nt | Lagynias dryadum chloroplast trnT-t... | 1730 bp | Vangueria dryadum | QL-PLN-00-007 | 556 bp | View |
| AJ620147.1 | nt | Lagynias lasiantha chloroplast trnT... | 1737 bp | Vangueria lasiantha | QL-PLN-00-007 | 556 bp | View |
| AJ620177.1 | nt | Tapiphyllum cinerascens chloroplast... | 1722 bp | Tapiphyllum cinerascens | QL-PLN-00-007 | 556 bp | View |
| AJ620180.1 | nt | Vangueria infausta chloroplast trnT... | 1726 bp | Vangueria infausta | QL-PLN-00-007 | 556 bp | View |
| FN386360.1 | nt | Vangueriopsis lanciflora trnT-trnL ... | 1669 bp | Vangueriopsis lanciflora | QL-PLN-00-007 | 556 bp | View |
| JQ958284.1 | nt | Vangueria bowkeri voucher Lemaire &... | 1703 bp | Vangueria bowkeri | QL-PLN-00-007 | 556 bp | View |
| JQ958285.1 | nt | Vangueria dryadum voucher Lemaire &... | 1703 bp | Vangueria dryadum | QL-PLN-00-007 | 556 bp | View |
| JQ958287.1 | nt | Vangueria lasiantha voucher Lemaire... | 888 bp | Vangueria lasiantha | QL-PLN-00-007 | 556 bp | View |
| JQ958288.1 | nt | Vangueria macrocalyx voucher Lemair... | 1701 bp | Vangueria macrocalyx | QL-PLN-00-007 | 556 bp | View |
| JQ958289.1 | nt | Vangueria infausta voucher Lemaire ... | 1698 bp | Vangueria infausta | QL-PLN-00-007 | 556 bp | View |
| JQ958293.1 | nt | Vangueria pallidiflora voucher Ntem... | 1708 bp | Vangueria pallidiflora | QL-PLN-00-007 | 556 bp | View |
| JQ958296.1 | nt | Vangueria latifolia voucher Lemaire... | 1712 bp | Vangueria latifolia | QL-PLN-00-007 | 556 bp | View |
| KF488324.1 | nt | Vangueria infausta voucher Verstrae... | 1687 bp | Vangueria infausta | QL-PLN-00-007 | 556 bp | View |
| KF488330.1 | nt | Vangueria infausta voucher Verstrae... | 1687 bp | Vangueria infausta | QL-PLN-00-007 | 556 bp | View |
| KF488336.1 | nt | Vangueria latifolia voucher Lemaire... | 1698 bp | Vangueria latifolia | QL-PLN-00-007 | 556 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.