Amplicon details

Amplicon:

555 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctgctaag tgataacttt caaattcaga gaaacccagg aactaagaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcaaaa
151   aacgaaaaaa gggataggtg cagagactca atggaagctg ttctaacaaa
201   tggagttcac tgcgctggta gaggaatctt tccatggaaa cttcagaaag
251   gatgaaggat aaatggatct attgaatact atatcgaatg attcacgatg
301   gcccgaatct gtatttttta atatgaaaaa tggaagaatt ggtgtgaatt
351   gattccacat tgaagaaaaa atcgaatatt cattcatcaa atcattcact
401   ccatagtccg atagatcttt tcaagaactg attaatcgga cgagaataaa
451   gatagagtcc cgttctacat gtcaataccg gcaacaatga aatttatagt
501   aataggaaaa tccgtcgact ttaaaaatcg tgagggttca agtccctcta
551   tcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR038702.1 nt Ajuga bracteosa chloroplast, comple... 150342 bp Ajuga bracteosa QL-PLN-00-007 555 bp View
MN814855.1 nt Ajuga forrestii chloroplast, comple... 150342 bp Ajuga forrestii QL-PLN-00-007 555 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.