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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 550 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat tctgagccaa atcccatttt ccgaaaccaa aggtgaaaag
151   gggataggtg cagagactca acggaagctg ttctaacaaa tggagttggc
201   tgcattagta gagaaatctt tccatcgaaa attccgaaag tataaagtga
251   aggataaacg tatatatacg tattgaatac tatatcaaat gattaatgac
301   gactcgactg aatctgtatt ttttatatga aaacggaaga gaatagattc
351   cacattgaag aaagaatcga atattcattg atcaaatgat tcactccata
401   gtctgataga tcttttcaag aattgattaa tcggacgaga ataaagatag
451   agtcccgttc tacatgtcaa tgtcggcaac aatgaaattt atagtaagag
501   gaaaatccgt cgactttaaa aatcgtgagg gttcaagtcc ctctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KM592111.1 nt Gardenia rutenbergiana voucher Groe... 1647 bp Gardenia rutenbergiana QL-PLN-00-007 550 bp View
KJ815518.1 nt Gardenia manongarivensis voucher Ra... 1638 bp Gardenia manongarivensis QL-PLN-00-007 550 bp View
KJ815526.1 nt Gardenia rutenbergiana voucher Kare... 1587 bp Gardenia rutenbergiana QL-PLN-00-007 550 bp View
KJ815527.1 nt Gardenia rutenbergiana voucher Raza... 1643 bp Gardenia rutenbergiana QL-PLN-00-007 550 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.