JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

571 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa agtaaaggtt
151   cagaaagtga aaaaaaggat aggtgcagag actcaacgga agctgttcta
201   acaaatggag ttggctgcgt tagtagagaa atctttccat ctaaaattcc
251   gaaaggataa agtgaaggat aaacgtatat acgtattgaa tactatatca
301   aatgattaat gacgactcaa ctgaatctgt attttttata taaaaataga
351   agaattggtg tgaatagatt ccacattgaa gaaagaatcg aatattcatt
401   gatcaaatga ttcactccat agtctgatag atcttttcaa gaattgatta
451   atcagacgag aataaagata gagtcccgtt ctacatgtca atgtcggcaa
501   caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551   ggttcaagtc cctctatccc c

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
OQ946686.1	nt	Coffea arabica plastid, complete ge...	155008 bp	Coffea arabica	QL-PLN-00-007	571 bp	View
OQ946725.1	nt	Coffea arabica x Coffea canephora p...	155008 bp	Coffea arabica x Coffea canephora	QL-PLN-00-007	571 bp	View
OQ946726.1	nt	Coffea arabica plastid, complete ge...	155008 bp	Coffea arabica	QL-PLN-00-007	571 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.