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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 552 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaag ggataggtgc agagactcaa tggaagttgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaaacgta tacgtattga atactatatc aaatgattaa tgacgactcg
301   actgaatctg tattttttat atgaaaacgg aagaattggt gtgaatagat
351   tccacattga agaaagaatc gaatattcat tgattaaatg attcactcca
401   tagtctgata gatcttttca agaattgatt aatcggacga gaataaagat
451   agagtcccgt tctacatgtc aatgtcggca acaatgaaat ttatagtaag
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ620149.1 nt Canthium tetraphyllum chloroplast t... 1721 bp Canthium tetraphyllum QL-PLN-00-007 552 bp View
AJ620122.1 nt Canthium coromandelicum chloroplast... 1723 bp Canthium coromandelicum QL-PLN-00-007 552 bp View
AJ620124.1 nt Canthium glaucum chloroplast trnT-t... 1721 bp Canthium glaucum QL-PLN-00-007 552 bp View
AJ620174.1 nt Canthium mrimaense chloroplast trnT... 1722 bp Canthium mrimaense QL-PLN-00-007 552 bp View
AJ847401.1 nt Canthium coromandelicum chloroplast... 1707 bp Canthium coromandelicum QL-PLN-00-007 552 bp View
FM207120.1 nt Canthium tetraphyllum chloroplast t... 1742 bp Canthium tetraphyllum QL-PLN-00-007 552 bp View
KM386520.1 nt Eriosemopsis subanisophylla voucher... 1686 bp Eriosemopsis subanisophylla QL-PLN-00-007 552 bp View
JQ958231.1 nt Canthium glaucum voucher Kuchar 174... 1694 bp Canthium glaucum QL-PLN-00-007 552 bp View
JQ958235.1 nt Canthium spinosum voucher Lemaire &... 1694 bp Canthium spinosum QL-PLN-00-007 552 bp View
KM386521.1 nt Eriosemopsis subanisophylla voucher... 1686 bp Eriosemopsis subanisophylla QL-PLN-00-007 552 bp View
KM386522.1 nt Eriosemopsis subanisophylla voucher... 1686 bp Eriosemopsis subanisophylla QL-PLN-00-007 552 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.