Amplicon details

Amplicon:

586 bp
1     cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aactaaaaat
101   gggcaatcct gagccaaatc ttttttttga aaaaaaggtt tttttttttg
151   aaactcgaat aaaaaaagat aggtgcagag actcaatgga agctgttcta
201   acgaatggag ttgactacgt tgtgttggta gccggaatcc ttctatcgaa
251   attaaaaaaa ggatgactat atatctaata catacgtata catactgaca
301   tatcaaacga ttaatcatga cccgaattag tattatatat atgcaaaatt
351   cagagttatt gtggatctat tccaatcgaa gttgaaggaa gaacagaata
401   tttaatgatc aaatcattca ttccagggtt tgataggcct ttactttttt
451   ttgacaaact gattaatcgg acgagaataa agagagagtc ccattctaca
501   tgtcaatacc gacaacaatg aaatttatag taagaggaaa atccgtcgac
551   tttaaaaatc gtgagggttc aagtccctct atcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR260123.1 nt Hemerocallis fulva var. aurantiaca ... 156117 bp Hemerocallis fulva var. aurantiaca QL-PLN-00-007 586 bp View
OR260129.1 nt Hemerocallis hybrid cultivar cultiv... 156110 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260143.1 nt Hemerocallis hybrid cultivar cultiv... 156110 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260145.1 nt Hemerocallis hybrid cultivar cultiv... 156117 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.