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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 611 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaaa
101   gggcaatcct gagccaaatc cgtgttttga gaaaacaagg gggttctcga
151   actagaatac aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201   ctaacgaatc gagttaatta cgttgtgttg ttagtggaat tccttcgaaa
251   ttctaaaaag aagggcttta tacagctaat aaacacgtat agatactgag
301   atagcaaacg attaatcaca gaacccatat tataatattg gttctttatt
351   cttttttaga atgaaataga aatgattatg aaataaaaaa ttcataattt
401   ttttagaatt attgtgaatc cattccaatc gaatatttag taatcaaatc
451   cttcaattca aagttttgag gtcgttaaaa aagtggatta atcggatgag
501   gacaaagaga gagtcccatt ctacatgtca atactgacaa caatgaaatt
551   tctagtaaaa ggaaaatccg tcgactttat aagtcgtgag ggttcaagtc
601   cctctatccc c

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY589128.1 nt Poa compressa voucher PI 243216 trn... 1870 bp Poa compressa QL-PLN-00-007 611 bp View
AY589132.1 nt Poa interior voucher PI 236909 trnT... 1870 bp Poa interior QL-PLN-00-007 611 bp View
DQ353993.1 nt Poa hartzii subsp. hartzii voucher ... 1818 bp Poa hartzii subsp. hartzii QL-PLN-00-007 611 bp View
DQ353996.1 nt Poa abbreviata voucher Gillespie & ... 1825 bp Poa abbreviata QL-PLN-00-007 611 bp View
DQ353997.1 nt Poa pseudoabbreviata voucher Soreng... 1828 bp Poa pseudoabbreviata QL-PLN-00-007 611 bp View
DQ353999.1 nt Poa leptocoma voucher Soreng & Sore... 1784 bp Poa leptocoma QL-PLN-00-007 611 bp View
DQ354002.1 nt Poa interior voucher Soreng & Soren... 1805 bp Poa interior QL-PLN-00-007 611 bp View
DQ354003.1 nt Poa compressa voucher Gillespie 645... 1853 bp Poa compressa QL-PLN-00-007 611 bp View
GQ324418.1 nt Poa laxa subsp. flexuosa voucher CA... 1802 bp Poa laxa subsp. flexuosa QL-PLN-00-007 611 bp View
GQ324431.1 nt Poa lettermanii voucher US:Soreng &... 1801 bp Poa lettermanii QL-PLN-00-007 611 bp View
MT273359.1 nt Poa compressa voucher CAN:Gillespie... 1794 bp Poa compressa QL-PLN-00-007 611 bp View
MT273374.1 nt Poa skvortzovii voucher US:Soreng &... 1794 bp Poa skvortzovii QL-PLN-00-007 611 bp View
KJ681100.1 nt Poa langtangensis voucher R 88 tRNA... 1021 bp Poa langtangensis QL-PLN-00-007 611 bp View
KX522665.1 nt Poa nemoralis voucher PI 371759 trn... 1855 bp Poa nemoralis QL-PLN-00-007 611 bp View
KX522667.1 nt Poa palustris voucher PI 232351 trn... 1854 bp Poa palustris QL-PLN-00-007 611 bp View
KY987089.1 nt Poa biebersteinii voucher CAN:Gille... 1794 bp Poa biebersteinii QL-PLN-00-007 611 bp View
KY987090.1 nt Poa dahurica voucher CAN:Olonova 20... 1794 bp Poa dahurica QL-PLN-00-007 611 bp View
KY987093.1 nt Poa glauca voucher US:Soreng 7965 t... 1794 bp Poa glauca QL-PLN-00-007 611 bp View
KY987094.1 nt Poa glauca subsp. glauca voucher US... 1794 bp Poa glauca subsp. glauca QL-PLN-00-007 611 bp View
KY987098.1 nt Poa laxa subsp. fernaldiana voucher... 1795 bp Poa laxa subsp. fernaldiana QL-PLN-00-007 611 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.