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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 555 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aaagggatag gtgcagagac tcaatggaag ctgttctaac
201   aaatggagtt gattgcgctg gtagaggaat gaaacttcag aaaggatgaa
251   ggataaacgt atctattgaa tactatatca aaatggttga ttaatgatgg
301   cccgaatctg tatctgtatt tttgaatacg aaaaatggaa gaattggtgt
351   gaattgattc catattgaag aaagaatatt cattcatcaa atcattcact
401   ccatagtccg atagatcttt taaagaactg attaatcgga cgagaataaa
451   gatagagtcc cattctacat gtcaataccg gcaacaatga aatttatagt
501   aagaggaaaa tccgtcgact ttcaaaatcg tgagggttca agtccctcta
551   tcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP262736.1 nt Brandisia kwangsiensis isolate XY v... 159382 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262733.1 nt Brandisia kwangsiensis isolate JX 2... 155029 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262734.1 nt Brandisia kwangsiensis isolate MLP ... 159469 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View
OP262735.1 nt Brandisia kwangsiensis isolate XC v... 159382 bp Brandisia kwangsiensis QL-PLN-00-007 555 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.