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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 555 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aaaaggatag gtgcagagac tcaatggaag ctgttctaac
201   aaatggagtt gattgcgctg gtagaggaat gaaacttcag aaaggatgaa
251   ggataaacgt atctattgaa tactatatca aaatggttga ttaatgatgg
301   cccgaatctg tatctgtatt tttgaatacg aaaaatggaa gaattggtgt
351   gaattgattc catattgaag aaagaatatt cattcatcaa atcattcact
401   ccatagtccg atagatcttt taaagaactg attaatcgga cgagaataaa
451   gatagagtcc cattctacat gtcaataccg gcaacaatga aatttatagt
501   aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca agtccctcta
551   tcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP262726.1 nt Brandisia hancei isolate LL 1 vouch... 155187 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262722.1 nt Brandisia hancei isolate EM voucher... 154586 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262727.1 nt Brandisia hancei isolate LL 2 vouch... 154605 bp Brandisia hancei QL-PLN-00-007 555 bp View
OP262731.1 nt Brandisia hancei isolate WX voucher... 155288 bp Brandisia hancei QL-PLN-00-007 555 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.