JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

556 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaagaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgaaaaaa aaaggggata ggtgcagaga ctcaatggaa gctgttctaa
201   caaatggagt tgattgcgct ggtagaggaa tgaaacttca gaaaggatga
251   aggataaacg tatctattga atactatacc aaaatggttg attaatgatg
301   gcccgaatct gtatctgtat ttttgaatac gaaaaatgga agaattggtg
351   tgaattgatt ccatattgaa gaaagaatat tcattcatca aatcattcac
401   tccatagtcc gatagatctt ttaaagaact gattaatcgg acgagaataa
451   agatagagtc ccattctaca tgtcaatacc ggcaacaatg aaatttatag
501   taagaggaaa atccgtcgac tttcaaaatc gtgagggttc aagtccctct
551   atcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
OP262750.1	nt	Brandisia hancei x Brandisia discol...	155225 bp	Brandisia hancei x Brandisia discolor	QL-PLN-00-007	556 bp	View
OP262752.1	nt	Brandisia hancei x Brandisia discol...	155231 bp	Brandisia hancei x Brandisia discolor	QL-PLN-00-007	556 bp	View
OP262702.1	nt	Brandisia discolor isolate CY 2 vou...	155232 bp	Brandisia discolor	QL-PLN-00-007	556 bp	View
OP262710.1	nt	Brandisia discolor isolate NE 1 vou...	155225 bp	Brandisia discolor	QL-PLN-00-007	556 bp	View
OP262711.1	nt	Brandisia discolor isolate NE 2 vou...	155232 bp	Brandisia discolor	QL-PLN-00-007	556 bp	View
OP262712.1	nt	Brandisia discolor isolate NE 3 vou...	155225 bp	Brandisia discolor	QL-PLN-00-007	556 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.