JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

571 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggaaaggtt
151   cagaaagtga aaaaaaggat aggtgcagag actcaacgga agctgttcta
201   acaaatggag ttggctgcgt tagtagagaa atctttccat ctaaaattcc
251   gaaaggataa agtgaaggat aaacgtatat acgtattgaa tactatatca
301   aatgattaat gacgactcaa ctgaatctgt attttttata taaaaatgga
351   agaattggtg tgaatagatt ccacattgaa gaaagaatcg aatattcatt
401   gatcaaatga ttcactccat agtctgatag atcttttcaa gaattgatta
451   atcggacgag aataaagata gagtcccgtt ctacatgtca atgtcggcaa
501   caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551   ggttcaagtc cctctatccc c

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
KF965248.1	nt	Coffea mannii isolate B147 trnT-trn...	1647 bp	Coffea mannii	QL-PLN-00-007	571 bp	View
OQ946707.1	nt	Coffea canephora plastid, complete ...	154952 bp	Coffea canephora	QL-PLN-00-007	571 bp	View
OQ946708.1	nt	Coffea canephora plastid, complete ...	154959 bp	Coffea canephora	QL-PLN-00-007	571 bp	View
OQ946709.1	nt	Coffea canephora plastid, complete ...	154953 bp	Coffea canephora	QL-PLN-00-007	571 bp	View
KJ815429.1	nt	Coffea mannii trnT-trnL intergenic ...	1643 bp	Coffea mannii	QL-PLN-00-007	571 bp	View
KJ815433.1	nt	Coffea melanocarpa voucher Bremer 2...	1709 bp	Coffea melanocarpa	QL-PLN-00-007	571 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.