Amplicon details

Amplicon:

552 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgaagacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atccttgttt tctcaaaaca agggttcaga
151   gagcgaaaaa gaggataggt gcagagactc aatggaagct gttctaacaa
201   atggagttga ccacgttggt agaagaattg aaacttcaga aaggatgaag
251   gataaacgta tctattgaat actattgatg attaataatg gcccgaatct
301   gtatctgggt attttctata tgaaaaatag aagaattggt gtgaattgat
351   ttcacattga taaaagaatc gaatatttat tagtcaaatc attcactcca
401   cagtccgata gatctcttaa agaacttatt attcggacga gaataaagat
451   agagtcccgt tctacatgtc aataccggca acaatgaaac ttatagtaag
501   aggaaaatcc gtcgacttta aaaatcgtga gggttcaagt ccctctatcc
551   cc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ492300.1 nt Primulina tabacum chloroplast tRNA-... 948 bp Primulina tabacum QL-PLN-00-007 552 bp View
OP243284.1 nt Primulina sp. ZYZ-2023a voucher WF2... 972 bp Primulina sp. ZYZ-2023a QL-PLN-00-007 552 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.