Amplicon details

Amplicon:

559 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgttgt ctcaaaacaa aggttcagaa
151   ggcgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttaact gcgttggtag cggaatcttt cgatcgaaac ttcagaaaga
251   gtgacggata aacgtatcta ttgaatacta tatcaaatga ttaatgatgg
301   accgaatctg tattttttta tatgaaaaat ggaaaaattg gtgtgaattt
351   attccacatt gaagaaagaa tcaaataaaa tattcattca tcaaatcatt
401   cactccatag tctgatagat cttttaaaga actgattaat cggacgagaa
451   taaagataga gtcccattct acatgtcaat accggcaaca atgaaattta
501   tagtaagagg aaaatccgtc gactttaaaa atcgtgaggg ttcaagtccc
551   tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP007402.1 nt Buddleja yunnanensis chloroplast, c... 154221 bp Buddleja yunnanensis QL-PLN-00-007 559 bp View
OP007422.1 nt Buddleja sp. GJ52 chloroplast, comp... 154347 bp Buddleja sp. GJ52 QL-PLN-00-007 559 bp View
OP013327.1 nt Buddleja officinalis chloroplast, c... 154275 bp Buddleja officinalis QL-PLN-00-007 559 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.