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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 526 bp 
1     cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat
101   gggcaatcct gagccaaatc cccttttttg aaaaaacaag tggttctcaa
151   actagaaacc aaaggaaaag gataggtgca gagactcaat ggaagctgtt
201   ctaacgaatc gaagtaataa cgattaatca cagaacccat attataatat
251   aggttcttta ttttattttt agaatgaaat taggaatgat tatgaaatag
301   aaaattcata atttttttag aattattgtg aatctattcc aatcgaatat
351   tgagtaatca aatccttcaa ttcattgttt tcgagatctt ttaaaaagtg
401   gattaatcgg acgaggataa agagagagtc ccattctaca tgtcaatact
451   gacaacaatg aaatttctag taaaaggaaa atccgtcgac tttataagtc
501   gtgagggttc aagtccctct atcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP235329.1 nt Saccharum spontaneum isolate SES275... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235378.1 nt Saccharum spontaneum isolate US78-5... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
LS975138.1 nt Saccharum spontaneum genome assembl... 141233 bp Saccharum spontaneum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.