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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 567 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaaaa ggataggtgc agagactcaa cggaagctgt tctaacaaat
201   ggagttggct acgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251   ataaagtgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301   attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351   ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401   aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451   ggcgagaata aagatagagt cccgttctac atgtcaatgt cggcaacaat
501   gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ136950.1 nt Atractocarpus heterophyllus voucher... 1630 bp Atractocarpus heterophyllus QL-PLN-00-007 567 bp View
KF965160.1 nt Atractocarpus bracteatus isolate BQ... 1648 bp Atractocarpus bracteatus QL-PLN-00-007 567 bp View
KJ815508.1 nt Gardenia colnettiana voucher Poulla... 1640 bp Gardenia colnettiana QL-PLN-00-007 567 bp View
KJ815509.1 nt Gardenia conferta voucher Mouly 337... 1642 bp Gardenia conferta QL-PLN-00-007 567 bp View
MK165238.1 nt Atractocarpus heterophyllus voucher... 1634 bp Atractocarpus heterophyllus QL-PLN-00-007 567 bp View
MK165245.1 nt Atractocarpus sp. 3 AM-2019 voucher... 1637 bp Atractocarpus sp. 3 AM-2019 QL-PLN-00-007 567 bp View
MK165247.1 nt Atractocarpus sp. 6 AM-2019 voucher... 1641 bp Atractocarpus sp. 6 AM-2019 QL-PLN-00-007 567 bp View
MK165250.1 nt Atractocarpus sp. 9 AM-2019 voucher... 1635 bp Atractocarpus sp. 9 AM-2019 QL-PLN-00-007 567 bp View
MK165252.1 nt Atractocarpus sp. 11 AM-2019 vouche... 1635 bp Atractocarpus sp. 11 AM-2019 QL-PLN-00-007 567 bp View
MK165253.1 nt Atractocarpus sp. 12 AM-2019 vouche... 1635 bp Atractocarpus sp. 12 AM-2019 QL-PLN-00-007 567 bp View
MK165257.1 nt Gardenia conferta voucher Barrabe 3... 1635 bp Gardenia conferta QL-PLN-00-007 567 bp View
MK165258.1 nt Gardenia deplanchei voucher Munzing... 1634 bp Gardenia deplanchei QL-PLN-00-007 567 bp View
MK165261.1 nt Atractocarpus sp. 5 AM-2019 voucher... 1652 bp Atractocarpus sp. 5 AM-2019 QL-PLN-00-007 567 bp View
MK165262.1 nt Randia brandzeana voucher Barrabe 3... 1634 bp Randia brandzeana QL-PLN-00-007 567 bp View
MK165264.1 nt Randia ngoyensis voucher Munzinger ... 1635 bp Randia ngoyensis QL-PLN-00-007 567 bp View
MK165266.1 nt Randia pancheriana voucher Mouly 85... 1634 bp Randia pancheriana QL-PLN-00-007 567 bp View
MK165267.1 nt Randia pseudoterminalis voucher Mun... 1620 bp Randia pseudoterminalis QL-PLN-00-007 567 bp View
KY348835.1 nt Gardenia conferta chloroplast, part... 128862 bp Gardenia conferta QL-PLN-00-007 567 bp View
MK165233.1 nt Atractocarpus aragoensis voucher Mu... 1638 bp Atractocarpus aragoensis QL-PLN-00-007 567 bp View
MK165260.1 nt Randia artensis voucher Barrabe 755... 1636 bp Randia artensis QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.