Amplicon details

Amplicon:

571 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   ggcaaaaaag ggataggtgc agagactcga tggaagctgt tctaacaaat
201   ggagttgact tcgttggtag aggaatctct ccatcgaaac ttcagaaagg
251   gtgacgggta aacgtatcta ttgaatactc tatcaaaatc aaatgattaa
301   tggtgccccg aatctgtatc tgtatttttt atataaaaag tggaaaattt
351   ggtgtgaatt tattccacca ttgaagaaag aattaactaa aatattcatt
401   catcaaatca ttcactccat agtctgatag atcttttaaa gatctgatta
451   attggacaag aataaagata gagtcccatt ctacatgtca ataccgacaa
501   caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551   ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AJ296495.1 nt Pseudoselago ascendens chloroplast ... 1829 bp Pseudoselago ascendens QL-PLN-00-007 571 bp View
AJ296498.1 nt Pseudoselago subglabra chloroplast ... 1843 bp Pseudoselago subglabra QL-PLN-00-007 571 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.