Amplicon details |
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Amplicon: |
526 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggtaacttc caaattcaga gaaaccctgg aatgaaaaat 101 gggcaatcct gagccaaatc cccttttttg aaaaaacaag tggttctcaa 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gaagtaataa cgattaatca cagaacccat attataatat 251 aggttcttta ttttattttt agaatgaaat taggaatgat tatgaaatag 301 aaaattcata atttttttag aattattgtg aatctattcc aatcgaatat 351 tgagtaatca aatccttcaa ttcattgttt tcgagatctt ttaaaaagtg 401 gattaatcgg acgaggataa agagagagtc ccattctaca tgtcaatact 451 gacaacaatg aaatttctag taaaaggaaa atccgtcgac tttataagtc 501 gtgagggttc aagtccctct atcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| OP235376.1 | nt | Saccharum spontaneum isolate US56-1... | 141187 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| OP235377.1 | nt | Saccharum spontaneum isolate US60-0... | 141186 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| OP235379.1 | nt | Saccharum spontaneum isolate YNMZ c... | 141187 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| OP235380.1 | nt | Saccharum spontaneum isolate IND81-... | 141187 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| OP235381.1 | nt | Saccharum spontaneum isolate IND81-... | 141188 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| ON227480.1 | nt | Saccharum spontaneum chloroplast, c... | 141186 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| LN849912.1 | nt | Saccharum spontaneum chloroplast co... | 141185 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| LN849914.1 | nt | Saccharum hybrid chloroplast comple... | 141151 bp | Saccharum hybrid cultivar | QL-PLN-00-007 | 526 bp | View |
| LN896359.1 | nt | Saccharum hybrid cultivar Q165 chlo... | 141181 bp | Saccharum hybrid cultivar | QL-PLN-00-007 | 526 bp | View |
| LN896360.1 | nt | Saccharum spontaneum cultivar SES20... | 141162 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| MF431125.1 | nt | Saccharum barberi isolate Chunnee t... | 526 bp | Saccharum barberi | QL-PLN-00-007 | 526 bp | View |
| MF431126.1 | nt | Saccharum spontaneum isolate Dacca ... | 526 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| MF431127.1 | nt | Saccharum officinarum isolate EK02 ... | 526 bp | Saccharum officinarum | QL-PLN-00-007 | 526 bp | View |
| MF431128.1 | nt | Saccharum officinarum isolate Fiji2... | 526 bp | Saccharum officinarum | QL-PLN-00-007 | 526 bp | View |
| MF431129.1 | nt | Saccharum hybrid cultivar isolate G... | 526 bp | Saccharum hybrid cultivar | QL-PLN-00-007 | 526 bp | View |
| MF431130.1 | nt | Saccharum hybrid cultivar isolate G... | 526 bp | Saccharum hybrid cultivar | QL-PLN-00-007 | 526 bp | View |
| MF431131.1 | nt | Saccharum hybrid cultivar isolate G... | 526 bp | Saccharum hybrid cultivar | QL-PLN-00-007 | 526 bp | View |
| MF431132.1 | nt | Saccharum robustum isolate IN84_045... | 526 bp | Saccharum robustum | QL-PLN-00-007 | 526 bp | View |
| MF431134.1 | nt | Saccharum spontaneum isolate IND81_... | 526 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
| MF431135.1 | nt | Saccharum spontaneum isolate IND81_... | 526 bp | Saccharum spontaneum | QL-PLN-00-007 | 526 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.