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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 594 bp 
1     cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc cttattttga gaaaacaaag gtttataaaa
151   ctagaattta aaaggatagg tgcagagact caatggaagc tgttctaacg
201   aatggagttg actacgtttt gttggtagca ggaatccgtc tataaaaatt
251   acagaaaaga tggtcctata tacctaatac gtatgtatac atactgccat
301   atcaaacgat taatcatgac ccgaatctat tatattataa ttatatataa
351   ttataatatg aaaaattcag agttattatg aatccatttc aatggaagtt
401   gaaggaagaa tcgaatattc aattatgaaa tcattcattc cagagtttga
451   tagatctttt gaaaaactga ttaatcggac gagaataaag agagagtccc
501   attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551   ccgtcgactt ttaaaatcgt gagggttcaa gtccctctat cccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG996477.1 nt Musa acuminata subsp. malaccensis s... 593221 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
LC609621.1 nt Musa acuminata subsp. microcarpa ch... 170456 bp Musa acuminata subsp. microcarpa QL-PLN-00-007 594 bp View
LC609627.1 nt Musa acuminata cv. Pisang Lilin chl... 170586 bp Musa acuminata QL-PLN-00-007 594 bp View
LC609775.1 nt Musa laterita chloroplast DNA, comp... 170148 bp Musa laterita QL-PLN-00-007 594 bp View
LC610771.1 nt Musa siamensis chloroplast DNA, com... 170349 bp Musa siamensis QL-PLN-00-007 594 bp View
OK012353.1 nt Musa laterita chloroplast, complete... 170143 bp Musa laterita QL-PLN-00-007 594 bp View
KT257574.1 nt Musa acuminata subsp. malaccensis i... 971 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
MH603432.1 nt Musa ornata isolate ITC0637 plastid... 133383 bp Musa ornata QL-PLN-00-007 594 bp View
HG996477.1 nt Musa acuminata subsp. malaccensis s... 593221 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View
LC609620.1 nt Musa acuminata cv. Kluai Khai chlor... 170037 bp Musa acuminata QL-PLN-00-007 594 bp View
HF677508.1 nt Musa acuminata subsp. malaccensis c... 169972 bp Musa acuminata subsp. malaccensis QL-PLN-00-007 594 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.