JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

594 bp

1     cgaaatcggt agacgctacg gacttgattg gattgagcct tagtatggaa
51    acctgctaag tggtaacttc caaattcaga gaaaccctgg aattaaaaat
101   gggcaatcct gagccaaatc cttattttga gaaaacaaag gtttataaaa
151   ctagaattta aaaggatagg tgcagagact caatggaagc tgttctaacg
201   aatggagttg actacgtttt gttggtagca ggaatccgtc tataaaaatt
251   acagaaaaga tggtcctata tacctaatac gtatgtatac atactgccat
301   atcaaacgat taatcatgac ccgaatctat tatattataa ttatatataa
351   ttataatatg aaaaattcag agttattatg aatccatttc aatggaagtt
401   gaaggaagaa tcgaatattc aattatgaaa tcattcattc cagagtttga
451   tagatctttt gaaaaactga ttaatcggac gagaataaag agagagtccc
501   attctacatg tcaataccga caacaatgaa atttatagta agaggaaaat
551   ccgtcgactt taaaaatcgt gagggttcaa gtccctctat cccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
LC609622.1	nt	Musa acuminata var. zebrina chlorop...	169903 bp	Musa acuminata var. zebrina	QL-PLN-00-007	594 bp	View
LC609770.1	nt	Musa acuminata cv. Morado chloropla...	169696 bp	Musa acuminata	QL-PLN-00-007	594 bp	View
OK012348.1	nt	Musa mannii chloroplast, complete g...	170636 bp	Musa mannii	QL-PLN-00-007	594 bp	View
KT257578.1	nt	Musa acuminata subsp. siamea isolat...	971 bp	Musa acuminata subsp. siamea	QL-PLN-00-007	594 bp	View
KT257588.1	nt	Musa itinerans isolate SS&JS 175 Ho...	956 bp	Musa itinerans	QL-PLN-00-007	594 bp	View
KT257604.1	nt	Musa nanensis isolate SS&JS 473 Sri...	1002 bp	Musa nanensis	QL-PLN-00-007	594 bp	View
MT593357.1	nt	Musa acuminata var. chinensis chlor...	170402 bp	Musa acuminata var. chinensis	QL-PLN-00-007	594 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.