JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

571 bp

1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa acaaaggttc
151   agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201   gagttaaatg cgttggtaga ggactcttta catcgaaact tcagaaagaa
251   aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactata
301   tcaaatgatt aatgacgacc cgaatccgta gtttttctat aaaaaataga
351   agaattggtg tgaatccatt ctacattgaa gaaagaatcg aatattcatt
401   gatcaaatca ttcactccat agtctgatag atcttttgaa gaactgatta
451   atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
501   caatgaaatt tatagtaaaa ggaaaatccg tcgactttaa aaatcgtgag
551   ggttcaagtc cctctatccc c

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
KJ145743.1	nt	Solanum dimidiatum isolate LB3216 t...	1827 bp	Solanum dimidiatum	QL-PLN-00-007	571 bp	View
KJ145745.1	nt	Solanum dimidiatum isolate LB3495 t...	1812 bp	Solanum dimidiatum	QL-PLN-00-007	571 bp	View
HQ721915.1	nt	Solanum croatii isolate LB2536 trnT...	1468 bp	Solanum croatii	QL-PLN-00-007	571 bp	View
KC539168.1	nt	Solanum dimidiatum isolate LB1953 t...	1241 bp	Solanum dimidiatum	QL-PLN-00-007	571 bp	View
KC539171.1	nt	Solanum euacanthum isolate LB3291 t...	1839 bp	Solanum euacanthum	QL-PLN-00-007	571 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.