Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccgtgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttaa aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt taaaaagtgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| MT731950.1 | nt | Oryza alta isolate BOP022646 chloro... | 134824 bp | Oryza alta | QL-PLN-00-007 | 615 bp | View |
| MT726930.1 | nt | Oryza officinalis chloroplast, comp... | 134850 bp | Oryza officinalis | QL-PLN-00-007 | 615 bp | View |
| MT726932.1 | nt | Oryza punctata chloroplast, complet... | 134829 bp | Oryza punctata | QL-PLN-00-007 | 615 bp | View |
| OX397922.1 | nt | Oryza officinalis genome assembly, ... | 134861 bp | Oryza officinalis | QL-PLN-00-007 | 615 bp | View |
| KF359901.1 | nt | Oryza nivara chloroplast, complete ... | 134785 bp | Oryza nivara | QL-PLN-00-007 | 615 bp | View |
| KF359910.1 | nt | Oryza officinalis chloroplast, comp... | 134819 bp | Oryza officinalis | QL-PLN-00-007 | 615 bp | View |
| MF401452.1 | nt | Oryza rhizomatis chloroplast, compl... | 134748 bp | Oryza rhizomatis | QL-PLN-00-007 | 615 bp | View |
| KX085496.1 | nt | Oryza eichingeri chloroplast, compl... | 134821 bp | Oryza eichingeri | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.