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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 571 bp 
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acttactaag tgatcacttt caaattcaga gaaaccctgg aattaacaaa
101   aatgggcaat cctgagccaa atcctgtttt ctgaaaacaa acaaaggttc
151   agaaaaaaag gataggtgca gagactcaat ggaagctatt ctaacaaatg
201   gagttaaatg cattggtaga ggaatcttta catcgaaact tcagaaagaa
251   aaagaatgaa gtgaaggata aacgtatata catacgtatt gaatactcta
301   tcaaatgatt aatgacgacc cgaatccgta ttttttctat aaaaaataga
351   agaattggtg tgaatcgatt ctacattgaa gaaagaatcg aatattcatt
401   gatcaaatca ttcactccat agtctgatag atcctttgaa gaactgatta
451   atcggacgag aataaagata gagtcccgtt ctacatgtca ataccggcaa
501   caatgaaatt tatagtaaga ggaaaatccg tcgactttaa aaatcgtgag
551   ggttcaagtc cctctatccc c

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT955897.1 nt Lycium ruthenicum chloroplast, comp... 154911 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
MN916578.1 nt Lycium barbarum var. auranticarpum ... 1131 bp Lycium barbarum var. auranticarpum QL-PLN-00-007 571 bp View
MN916579.1 nt Lycium ruthenicum clone V12L0008 He... 1131 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
OM804220.1 nt Lycium sp. clone V12L0082 B8 tRNA-L... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804222.1 nt Lycium sp. clone V12L0083 B9-1 tRNA... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OM804223.1 nt Lycium sp. clone V12L0080 B6 tRNA-L... 1131 bp Lycium sp. QL-PLN-00-007 571 bp View
OP846043.1 nt Lycium ruthenicum chloroplast, comp... 154979 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
MK994503.1 nt Lycium ruthenicum voucher LRUTH2018... 154979 bp Lycium ruthenicum QL-PLN-00-007 571 bp View
MG729825.1 nt Lycium ruthenicum chloroplast, comp... 154869 bp Lycium ruthenicum QL-PLN-00-007 571 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.