Amplicon details

Amplicon:

595 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aatcaaaaat
101   gggcaatcct gagccaaatc ctgttttaca agaacaaaca agggttcaga
151   aagcgaaaaa aaagggggat aggtgcagag actcaatgga agctgttcta
201   agaaatgggg ttgactgcct tttttggtaa agaaaggaaa agaaatcctt
251   ctatcgaata tcgaaactcc ataaaggata agcgtgtata cactatgtat
301   acacaatgaa aaactatctc aaaaatgaca accgaatccg tatttttttt
351   tatgaaaaan aaaagaattg ttatgaatca attccaagtt gaagaaagaa
401   tcgaatattc attgatcaaa tcattcactc cacagtctga tcgatctttt
451   cttttgaaga actgattaat cggacaagaa taaagataga gtcccattct
501   acatgtcaat atcaataccg gcaacaatga aatttagagt aagaggaaaa
551   tccgtcgact ttagaaatcg tgagggttca agtccctcta tcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
JF922153.1 nt Cedrela fissilis isolate MTPLA74 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View
JF922146.1 nt Cedrela fissilis isolate MTCAC83 tr... 1498 bp Cedrela fissilis QL-PLN-00-007 595 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.