Amplicon details

Amplicon:

588 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt tcgaaaacaa acaaagattc
151   agaaagcgaa aataaaaaaa aaggataggt gcagagactc aatggaagct
201   gttctaacaa atggagttga ctgcgttggt agaggaatcc ttccatcgaa
251   acttcagaaa ggatgaaaga gaaacctata tacatacgca tacgtactga
301   aatactatat caaatgatta atgacgaccc aaatctgtat ccgtattttt
351   tttttatgaa aaatggaaga attgttgtga atcgattcca cgttgaataa
401   agaattgaat attcattgat caaatcattt actccatagt ttgatagatc
451   ttttgaaaaa ctgattaatc ggacgagaat aaagatagag tcccattcta
501   catgtcaata ccgacaacaa tgaaatttat agtaagagga aaatccgtcg
551   actttagaaa tcgtgagggt tcaagtccct ctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
HM100596.1 nt Stewartia pteropetiolata isolate 80... 1004 bp Stewartia pteropetiolata QL-PLN-00-007 588 bp View
HM100597.1 nt Stewartia pteropetiolata isolate 80... 1003 bp Stewartia pteropetiolata QL-PLN-00-007 588 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.