JRC GMO-Amplicons | EURL GMFF

Amplicon details

Amplicon:

566 bp

1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggtacagaa
151   aggtgaaaag gggawaggtg cagagactca acggaagttg ttctaacaaa
201   tggagttggc tacgttagta gagaaatctt tccatctaaa attccgaaag
251   gataaagtga aagataaagg tatatacgta ttgaatacta tatcaaatga
301   ttaatgacga ctcgactgaa tctgtatttt ttatatgaaa agggaagaat
351   tggtgtgaat agattccaca ttaaagaaag aatcgaatat tcattgatta
401   aatgattcac tccatagtct gatagatctt ttcaagaatt gattaatcgg
451   acgagaataa agatagagcc ccgttctaca tgtcaatgtc ggcaacaatg
501   aaatttatag taagaggaaa atccgtcgac tttaaaaatc gtgagggttc
551   aagtccctct atcccc

An identical amplicon is found in the following matches:

Record ID	Database	Record description	Record length	Taxon	Method	Amplicon size	Match details
EU817457.1	nt	Doricera trilocularis trnT-trnL int...	1668 bp	Ixora trilocularis	QL-PLN-00-007	566 bp	View
KF965193.1	nt	Ixora trilocularis isolate AS036 tr...	1610 bp	Ixora trilocularis	QL-PLN-00-007	566 bp	View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.