European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 565 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcctgtttt ccgaaaccaa aggtagagaa
151   agtgaaaagg ggataggtgc agagactcaa cggaagttgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatcgaaaa ttccgaaagg
251   ataaagtgaa agataaaggt atatacgtat tgaatactat atcaaatgat
301   taatgacgac tcgactgaat ctgtattttt tatatgaaaa cggaagaatt
351   ggtgtgaata gattccacat taaagaaaga atcgaatatt cattgattaa
401   atgattcact ccatagtctg atagatcttt tcaagaattg attaatcgga
451   caagaataaa gatagagccc cgttctacat gtcaatgtcg gcaacaatga
501   aatttatagt aagaggaaaa tccgtcgact ttaaaaatcg tgagggttca
551   agtccctcta tcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU817456.1 nt Captaincookia margaretae trnT-trnL ... 1602 bp Ixora margaretae QL-PLN-00-007 565 bp View
FJ150538.1 nt Ixora sp. AM-2009 voucher Munzinger... 1614 bp Ixora sp. AM-2009 QL-PLN-00-007 565 bp View
FJ150546.1 nt Ixora calycina voucher Tirvengadume... 1533 bp Ixora calycina QL-PLN-00-007 565 bp View
FJ150550.1 nt Ixora collina voucher Mouly & Innoc... 1606 bp Ixora collina QL-PLN-00-007 565 bp View
FJ150554.1 nt Ixora dzumacensis voucher Mouly et ... 1612 bp Ixora dzumacensis QL-PLN-00-007 565 bp View
FJ150561.1 nt Ixora francii voucher Mouly & McPhe... 1597 bp Ixora francii QL-PLN-00-007 565 bp View
FJ150565.1 nt Ixora kuakuensis voucher Munzinger ... 1613 bp Ixora kuakuensis QL-PLN-00-007 565 bp View
FJ150566.1 nt Ixora lecardii voucher Mouly et al.... 1585 bp Ixora lecardii QL-PLN-00-007 565 bp View
FJ150577.1 nt Ixora pelagica voucher Smith 9288 (... 1598 bp Ixora pelagica QL-PLN-00-007 565 bp View
FJ150589.1 nt Ixora sp. Mouly & Innocente 215 vou... 1608 bp Ixora sp. Mouly & Innocente 215 QL-PLN-00-007 565 bp View
FJ150592.1 nt Ixora sp. Dagostini 859 voucher Dag... 1613 bp Ixora sp. Dagostini 859 QL-PLN-00-007 565 bp View
FJ150607.1 nt Ixora yaouhensis voucher Mouly 153 ... 1557 bp Ixora yaouhensis QL-PLN-00-007 565 bp View
KF965176.1 nt Ixora margaretae isolate AN062 trnT... 1586 bp Ixora margaretae QL-PLN-00-007 565 bp View
FJ150537.1 nt Ixora sp. AM-2009 voucher Munzinger... 1606 bp Ixora sp. AM-2009 QL-PLN-00-007 565 bp View
FJ150551.1 nt Ixora comptonii voucher Munzinger 1... 1609 bp Ixora comptonii QL-PLN-00-007 565 bp View
FJ150590.1 nt Ixora sp. Mouly & Innocente 272 vou... 1614 bp Ixora sp. Mouly & Innocente 272 QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.