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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 567 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acccactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaagg ggataggtgc agagactcaa cggaagctgt tctaacaaat
201   ggagttggct gcgttagtag agaaatcttt ccatctaaaa ttccgaaagg
251   gtaaagtgaa ggataaacgt atatatacgt attgaatact atatcaaatg
301   attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351   ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401   aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451   gacgagaata aagatagagt cctgttctac atgtcaatgt cggcaacaat
501   gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AM117377.1 nt Pavetta lanceolata chloroplast tRNA... 1596 bp Pavetta lanceolata QL-PLN-00-007 567 bp View
HM164331.1 nt Pavetta indica voucher Andreasen 20... 1659 bp Pavetta indica QL-PLN-00-007 567 bp View
KM592131.1 nt Pavetta batesiana voucher Dessein &... 1683 bp Pavetta batesiana QL-PLN-00-007 567 bp View
KM592138.1 nt Pavetta suffruticosa voucher Lachen... 1668 bp Pavetta suffruticosa QL-PLN-00-007 567 bp View
KM592130.1 nt Pavetta agrostiphylla voucher Breme... 1678 bp Pavetta agrostiphylla QL-PLN-00-007 567 bp View
KM592132.1 nt Pavetta hymenophylla voucher Luke e... 1676 bp Pavetta hymenophylla QL-PLN-00-007 567 bp View
KM592135.1 nt Pavetta schumanniana voucher Dessei... 1684 bp Pavetta schumanniana QL-PLN-00-007 567 bp View
KM592136.1 nt Pavetta sp. B SJ-2014 trnT-trnL int... 1677 bp Pavetta sp. B SJ-2014 QL-PLN-00-007 567 bp View
KM592137.1 nt Pavetta sp. C SJ-2014 trnT-trnL int... 1678 bp Pavetta sp. C SJ-2014 QL-PLN-00-007 567 bp View
KM592139.1 nt Pavetta sp. A SJ-2014 trnT-trnL int... 1681 bp Pavetta sp. A SJ-2014 QL-PLN-00-007 567 bp View
KM592143.1 nt Pavetta tetramera voucher Van de We... 1668 bp Pavetta tetramera QL-PLN-00-007 567 bp View
KM592166.1 nt Tarenna jolinonii voucher Champluvi... 1669 bp Tarenna jolinonii QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.