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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 567 bp 
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    actcactaag tgataacttt caaattcaga gaaaccctgg aattaataaa
101   aaggggcaat cctgagccaa atcccgtttt ccgaaaccaa aggttcagaa
151   agtgaaaagg ggataggtgc agagactcaa cggaagctgt tctaacaaat
201   ggagttggct gcattagtag agaaatcttt ccatctaaaa ttccgaaagg
251   gtaaagtgaa ggataaacgt atatatacgt attgaatact atgtcaaatg
301   attaatgacg actcgactga atctgtattt tttatatgaa aacggaagaa
351   ttggtgtgaa tagattccac attgaagaaa gaatcgaata ttcattgatc
401   aaatgattca ctccatagtc tgatagatct tttcaagaat tgattaatcg
451   gacgagaata aagatagagt cctgttctac atgtcaatgt cggcaacaat
501   gaaatttata gtaagaggaa aatccgtcga ctttaaaaat cgtgagggtt
551   caagtccctc tatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
AM117355.1 nt Coptosperma sp. Razafimandimbison 5... 1727 bp Coptosperma sp. Razafimandimbison 525 QL-PLN-00-007 567 bp View
KF965235.1 nt Paracephaelis sp. De Block 1174 iso... 1685 bp Paracephaelis sp. De Block 1174 QL-PLN-00-007 567 bp View
KF965257.1 nt Schizenterospermum sp. Davis 2580 i... 1672 bp Schizenterospermum sp. Davis 2580 QL-PLN-00-007 567 bp View
KM592102.1 nt Coptosperma sp. B SJ-2014 trnT-trnL... 1671 bp Coptosperma sp. B SJ-2014 QL-PLN-00-007 567 bp View
KM592103.1 nt Coptosperma sp. C SJ-2014 trnT-trnL... 1709 bp Coptosperma sp. C SJ-2014 QL-PLN-00-007 567 bp View
KM592104.1 nt Coptosperma sp. D SJ-2014 trnT-trnL... 1667 bp Coptosperma sp. D SJ-2014 QL-PLN-00-007 567 bp View
KM592106.1 nt Coptosperma sp. A SJ-2014 trnT-trnL... 1687 bp Coptosperma sp. A SJ-2014 QL-PLN-00-007 567 bp View
KM592127.1 nt Paracephaelis cinerea voucher De Bl... 1667 bp Paracephaelis cinerea QL-PLN-00-007 567 bp View
KM592128.1 nt Paracephaelis saxatilis voucher De ... 1667 bp Paracephaelis saxatilis QL-PLN-00-007 567 bp View
KM592129.1 nt Paracephaelis tiliacea voucher Groe... 1667 bp Paracephaelis tiliacea QL-PLN-00-007 567 bp View
KM592178.1 nt Tarenna alleizettei voucher De Bloc... 1668 bp Tarenna alleizettei QL-PLN-00-007 567 bp View
KM592182.1 nt Tarenna thouarsiana voucher De Bloc... 1667 bp Tarenna thouarsiana QL-PLN-00-007 567 bp View
KJ815588.1 nt Coptosperma sp. Eriksson et al. T95... 1660 bp Coptosperma sp. Eriksson et al. T957 QL-PLN-00-007 567 bp View
KJ815589.1 nt Coptosperma bernierianum voucher Sc... 1721 bp Coptosperma bernierianum QL-PLN-00-007 567 bp View
KJ815594.1 nt Coptosperma humblotii voucher Breme... 1612 bp Coptosperma humblotii QL-PLN-00-007 567 bp View
KJ815597.1 nt Coptosperma mitochondrioides vouche... 1670 bp Coptosperma mitochondrioides QL-PLN-00-007 567 bp View
KJ815601.1 nt Coptosperma sp. Karehed et al. 227 ... 1677 bp Coptosperma sp. Karehed et al. 227 QL-PLN-00-007 567 bp View
KJ815603.1 nt Coptosperma sp. Kainulainen et al. ... 1721 bp Coptosperma sp. Kainulainen et al. 76 QL-PLN-00-007 567 bp View
KJ815604.1 nt Coptosperma sp. Bremer et al. 5297 ... 1695 bp Coptosperma sp. Bremer et al. 5297 QL-PLN-00-007 567 bp View
KJ815611.1 nt Coptosperma zygoon voucher Wild 229... 1669 bp Coptosperma zygoon QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.