Amplicon details

Amplicon:

551 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   aaggggcaat cctgagccaa atcctgtttt cttaaaacaa aagttcagaa
151   aacgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttgatt gcgctgatag aggaatgaaa cttcagaaag gatgaaggat
251   aaacgtatct attgaataga tatcaaaatc aaatgattga ttaatgatgg
301   cccaaatctc tatctgtatt tttgactacg aaaagtggaa gaattggtgt
351   gaatttcttc cataaagaat attcagtcat caaatcattc actccatagt
401   ccgatagatc ttttttaaaa gatttgatga atcggacgag aataaagata
451   gagtcccatt ctacatgtca ataccggcaa caatgaaatt tatagtaaaa
501   ggaaaatccg tcgactttta aaatcgtgag ggttcaagtc cctctatccc
551   c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828156.1 nt Agalinis gattingeri isolate 45MO tR... 1653 bp Agalinis gattingeri QL-PLN-00-007 551 bp View
EU828157.1 nt Agalinis gattingeri isolate 8MO tRN... 1624 bp Agalinis gattingeri QL-PLN-00-007 551 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.