Amplicon details

Amplicon:

539 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   aaagggcaat cctgagccaa atcctgtttt cttaaaacaa aagttcagaa
151   aacgaaaaaa ggataggtgc agagactcaa tggaagctgt tctaacaaat
201   ggagttgatt gcgctgatag aggaatgaaa gaaaggatac acgtatctat
251   tgaatagata gcaaaatcaa atgattgatt aatgatggcc caaatctcta
301   tctgtatttt tgaatacgaa aagtggaaga attggtgtga atttcttcca
351   taaagaatat tcattcatca aatcattcac tccatagtcc aatagatctt
401   ttttcaaaga tctgattaat cggacgagaa taaagataga gtcccattct
451   acatgtcaat accggcaaca atgaaattta tagtaaaagg aaaatccgtc
501   gacttttaaa atcgtgaggg ttcaagtccc tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828151.1 nt Agalinis fasciculata isolate 2GA tR... 1586 bp Agalinis fasciculata QL-PLN-00-007 539 bp View
EU828152.1 nt Agalinis fasciculata isolate 4LA tR... 1605 bp Agalinis fasciculata QL-PLN-00-007 539 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.