Amplicon details

Amplicon:

553 bp
1     cgaaatcggt agacgctacg gacttaattg aattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccctgg aattaagaaa
101   aaagggcaat cctgagccaa atcctgtttg cttaaaacaa aagttcagaa
151   aacgaaaaaa aggataggtg cagagactca atggaagctg ttctaacaaa
201   tggagttggt tgcgctgata gaggaatgaa acttcagaaa ggatgaagga
251   taaacgtatc tattgaatac tatatcaaaa tcaaatgatt gattaatgat
301   ggcccaaatc tcgatctgta tttttgaata cgaaaagtgg aagaattggt
351   gtgaatttct tccataaaga atattcattc atcaaatcat tcactccata
401   gtccgataga tcttttttaa aagatctgat taatcggacg agaataaaga
451   tagagtccca ttctacatgt caataccggc aacaatgaaa tttttagtaa
501   aaggaaaatc cgtcgacttt aaaaatcgtg agggttcaag tccctctatc
551   ccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU828144.1 nt Agalinis strictifolia isolate TX tR... 1656 bp Agalinis strictifolia QL-PLN-00-007 553 bp View
EU828196.1 nt Agalinis strictifolia isolate 4 tRN... 1636 bp Agalinis strictifolia QL-PLN-00-007 553 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.