Amplicon details

Amplicon:

564 bp
1     cgaaatcggt agacgctacg gacttaattg gattgagcct tggtatggaa
51    acctactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaacaa aggttcagaa
151   aacgccaaag ggggataggt gcagagactc aatggaagct gttctaacaa
201   atggagttga ctgcgtgggg tagaggaatc tttccatcga aacttcagaa
251   aggatgaagg ataaacgtat ctattgaata ctctatcaaa tgattaatga
301   tggccccgaa tctgtatctg tattttttta tatgaaaaat ggaagaattg
351   gtgtgaattg attccacatt gaagaaagaa tcaactagtc cttcatcaaa
401   tcattcactc catagtccga taaatctttt aaagaacgga ttaatcggac
451   gagaataaag atagagtccc attctacatg tcaataccgg caacaatgaa
501   atttatagta agaggaaaat ccgtcgactt taaaaatcgt gagggttcaa
551   gtccctctat cccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EF571570.1 nt Aloysia virgata voucher R. G. Olmst... 1627 bp Aloysia virgata QL-PLN-00-007 564 bp View
MG709446.1 nt Aloysia gratissima voucher KL61 tRN... 564 bp Aloysia gratissima QL-PLN-00-007 564 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.