Amplicon details

Amplicon:

529 bp
1     cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ttcaaaaaaa aggataggtg
151   cagagactca atggaagttg ttctaacaaa tggagttgac tgcgccggta
201   gaggaatctt tccacggaaa ctttagaaag gatgaaggat aaacccatct
251   attgaatact atatcaaatg attaatgttg gcccgaatct gtttttttaa
301   tatgaaaatg gaaaaatcga tgtgaattta tttcacgttg aagaataaat
351   cgaatattca tcaactcatt cactccatag ttcgatagat cttttaaaga
401   acttattaat cggacgagaa taaagataga gtcccattct acatgtcaat
451   accggcaaca atgaaattta tagtaagagg aaaatccgtc gactttaaaa
501   atcgtgaggg ttcaagtccc tctatcccc 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
OK094518.1 nt Salvia chienii chloroplast, complet... 151530 bp Salvia chienii QL-PLN-00-007 529 bp View
MW435409.1 nt Salvia plectranthoides voucher 0006... 151416 bp Salvia plectranthoides QL-PLN-00-007 529 bp View
EU220732.1 nt Salvia miltiorrhiza from China tRNA... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
EU220733.1 nt Salvia miltiorrhiza from China tRNA... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
MT012420.1 nt Salvia miltiorrhiza f. alba chlorop... 151389 bp Salvia miltiorrhiza f. alba QL-PLN-00-007 529 bp View
KC414288.1 nt Salvia miltiorrhiza isolate 5111900... 888 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
HF586694.1 nt Salvia miltiorrhiza chloroplast com... 151332 bp Salvia miltiorrhiza QL-PLN-00-007 529 bp View
MZ855771.1 nt UNVERIFIED: Salvia liguliloba chlor... 151490 bp Salvia liguliloba QL-PLN-00-007 529 bp View
MW435406.1 nt Salvia honania voucher 0168 chlorop... 151522 bp Salvia honania QL-PLN-00-007 529 bp View
MW435407.1 nt Salvia nanchuanensis voucher YJX-01... 151426 bp Salvia nanchuanensis QL-PLN-00-007 529 bp View
MW435408.1 nt Salvia nanchuanensis var. pteridifo... 151455 bp Salvia nanchuanensis var. pteridifolia QL-PLN-00-007 529 bp View
MW752212.1 nt Salvia japonica voucher GX Hu & F Z... 151393 bp Salvia japonica QL-PLN-00-007 529 bp View
MW752214.1 nt Salvia prionitis voucher GX Hu & F ... 151387 bp Salvia prionitis QL-PLN-00-007 529 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.