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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon details

Amplicon:

 529 bp 
1     cgaaatcggt agacgctacg gacttaatta gattgagcct tggtatggaa
51    acttactaag tgataacttt caaattcaga gaaaccccgg aattaataaa
101   aatgggcaat cctgagccaa atcctgtttt ctcaaaaaaa aggataggtg
151   cagagactca atggaagttg ttctaacaaa tggagttgac tgcgccggta
201   gaggaatctt tccacggaaa ctttagaaag gatgaaggat aaacccatct
251   attgaatact atatcaaatg attaatgttg gcccgaatct gtttttttaa
301   tatgaaaatg gaaaaatcga tgtgaattta tttcacgttg aagaataaat
351   cgaatattca tcaactcatt cactccatag ttcgatagat cttttaaaga
401   acttattaat cggacgagaa taaagataga gtcccattct acatgtcaat
451   accggcaaca atgaaattta tagtaagagg aaaatccgtc gactttaaaa
501   atcgtgaggg ttcaagtccc tctatcccc

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU200171.1 nt Salvia cynica tRNA-Leu (trnL) gene ... 889 bp Salvia cynica QL-PLN-00-007 529 bp View
EU200176.1 nt Salvia omeiana tRNA-Leu (trnL) gene... 889 bp Salvia omeiana QL-PLN-00-007 529 bp View
EU200177.1 nt Salvia przewalskii tRNA-Leu (trnL) ... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
MT634150.1 nt Salvia castanea f. castanea plastid... 154984 bp Salvia castanea f. castanea QL-PLN-00-007 529 bp View
KC414311.1 nt Salvia przewalskii isolate 51119004... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
KC414303.1 nt Salvia przewalskii isolate 51119003... 888 bp Salvia przewalskii QL-PLN-00-007 529 bp View
MT156375.1 nt Salvia umbratica chloroplast, compl... 151640 bp Salvia umbratica QL-PLN-00-007 529 bp View
MW752208.1 nt Salvia umbratica voucher GX Hu 623 ... 151641 bp Salvia umbratica QL-PLN-00-007 529 bp View
MK944407.1 nt Salvia prattii chloroplast, complet... 151690 bp Salvia prattii QL-PLN-00-007 529 bp View
KC414286.1 nt Salvia hylocharis isolate 511190014... 888 bp Salvia hylocharis QL-PLN-00-007 529 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.