Amplicon details

Amplicon:

581 bp
1     cgaaatcggt agacgctacg gacttaattg aattgaattg agcgttggta
51    tggaaaccta ccaagtgata actttcaaat tcagagaaac cctggaatta
101   aaaatgggca atcctgagcc aaatccggtt ttctgaaaac aaacaagggt
151   tcagaaggcg ataataaaaa aggataggtg cagagactca atggaagctg
201   ttctaacaaa tggagttggc tgcggtgcgt tagtaaagga atcactccag
251   aaaggatgaa gaataaacct atatacgtat acgtactgaa atagtatctt
301   caaatgatta atgacaaccc aaatccgtat ttcttttaat tttcatgaaa
351   aattaaagaa ttattgtaaa tcaattatta agttgaaaaa agaattaaat
401   attcattaat caaatcattt actccatcaa aatctgatag atcttttgaa
451   gaatggatta atcggacgag aataaagata gagtcccatt ttacatgtca
501   atatcgacaa caatgaaatt tatagtaaga ggaaaatccg tcgactttaa
551   aaatcgtgag ggttcaagtc cctctatccc c 

An identical amplicon is found in the following matches:

Record ID Database Record description Record length Taxon Method Amplicon size Match details
EU191016.1 nt Ficus carica cultivar Hamri tRNA-Le... 583 bp Ficus carica QL-PLN-00-007 581 bp View
KX572959.1 nt Ficus sarmentosa var. nipponica iso... 1037 bp Ficus sarmentosa var. nipponica QL-PLN-00-007 581 bp View
KX572960.1 nt Ficus carica isolate MHG tRNA-Leu (... 1037 bp Ficus carica QL-PLN-00-007 581 bp View


Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.