Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| KM088023.1 | nt | Oryza barthii chloroplast, complete... | 134590 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM088024.1 | nt | Oryza longistaminata chloroplast, c... | 134558 bp | Oryza longistaminata | QL-PLN-00-007 | 615 bp | View |
| KT289403.1 | nt | Oryza sativa Aromatic Japonica Grou... | 134499 bp | Oryza sativa aromatic subgroup | QL-PLN-00-007 | 615 bp | View |
| KT289404.1 | nt | Oryza sativa Tropical Japonica Grou... | 134536 bp | Oryza sativa tropical japonica subgroup | QL-PLN-00-007 | 615 bp | View |
| AP014966.1 | nt | Oryza sativa Japonica Group DNA, ch... | 23207287 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| KU705873.1 | nt | Oryza sativa Indica Group cultivar ... | 134493 bp | Oryza sativa Indica Group | QL-PLN-00-007 | 615 bp | View |
| KR364802.1 | nt | Oryza glumipatula cultivar W1187 ch... | 134401 bp | Oryza glumipatula | QL-PLN-00-007 | 615 bp | View |
| KR364803.1 | nt | Oryza glumipatula cultivar W2201 ch... | 134575 bp | Oryza glumipatula | QL-PLN-00-007 | 615 bp | View |
| OX637246.1 | nt | Oryza sativa genome assembly, chrom... | 51113606 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| OX637255.1 | nt | Oryza sativa genome assembly, chrom... | 19643871 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| OX637255.1 | nt | Oryza sativa genome assembly, chrom... | 19643871 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| OX637255.1 | nt | Oryza sativa genome assembly, chrom... | 19643871 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| CP132244.1 | nt | Oryza sativa Japonica Group cultiva... | 23931887 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| OP729774.2 | nt | Oryza sativa Indica Group cultivar ... | 134569 bp | Oryza sativa Indica Group | QL-PLN-00-007 | 615 bp | View |
| KF359903.1 | nt | Oryza glaberrima chloroplast, compl... | 134661 bp | Oryza glaberrima | QL-PLN-00-007 | 615 bp | View |
| KF359904.1 | nt | Oryza barthii chloroplast, complete... | 134581 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KF359906.1 | nt | Oryza meridionalis chloroplast, com... | 134553 bp | Oryza meridionalis | QL-PLN-00-007 | 615 bp | View |
| GX922499.1 | emblrelpat | Sequence 18407 from patent US 7868149. | 16684 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| GX934230.1 | emblrelpat | Sequence 30138 from patent US 7868149. | 47474 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
| GX972464.1 | emblrelpat | Sequence 68372 from patent US 7868149. | 13915 bp | unidentified | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.