Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| OV050064.1 | nt | Oryza rufipogon genome assembly, or... | 134502 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050065.1 | nt | Oryza rufipogon genome assembly, or... | 134515 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050066.1 | nt | Oryza rufipogon genome assembly, or... | 134536 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050067.1 | nt | Oryza rufipogon genome assembly, or... | 134537 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050068.1 | nt | Oryza rufipogon genome assembly, or... | 134507 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050069.1 | nt | Oryza rufipogon genome assembly, or... | 134536 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OL912836.1 | nt | Oryza nivara chloroplast, complete ... | 134555 bp | Oryza nivara | QL-PLN-00-007 | 615 bp | View |
| CP101145.1 | nt | Oryza sativa Japonica Group cultiva... | 28379153 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| KM881636.1 | nt | Oryza barthii isolate 104124 chloro... | 134596 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM881637.1 | nt | Oryza barthii isolate 86481 chlorop... | 134640 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM881638.1 | nt | Oryza glaberrima isolate 104040 chl... | 134606 bp | Oryza glaberrima | QL-PLN-00-007 | 615 bp | View |
| HG997303.1 | nt | Oryza sativa genome assembly, organ... | 134556 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| KM103373.1 | nt | Oryza meridionalis voucher W1943 ch... | 134556 bp | Oryza meridionalis | QL-PLN-00-007 | 615 bp | View |
| KM103374.1 | nt | Oryza glumipatula voucher W2112 chl... | 134575 bp | Oryza glumipatula | QL-PLN-00-007 | 615 bp | View |
| KM103377.1 | nt | Oryza glaberrima voucher HHU-KNR201... | 134586 bp | Oryza glaberrima | QL-PLN-00-007 | 615 bp | View |
| KM103378.1 | nt | Oryza barthii voucher IRGC104574 ch... | 134585 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM103379.1 | nt | Oryza barthii voucher WAB0028976 ch... | 134678 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM103380.1 | nt | Oryza barthii voucher WAB0028903 ch... | 134678 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM103381.1 | nt | Oryza barthii voucher WAB0028952 ch... | 134613 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM088022.1 | nt | Oryza nivara chloroplast, complete ... | 134516 bp | Oryza nivara | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.