Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| JN861110.1 | nt | Oryza sativa Indica Group chloropla... | 134459 bp | Oryza sativa Indica Group | QL-PLN-00-007 | 615 bp | View |
| MW711321.1 | nt | Oryza rufipogon isolate Or135 chlor... | 134963 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| MW711322.1 | nt | Oryza rufipogon isolate Or136 chlor... | 134921 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| CP132235.1 | nt | Oryza sativa Japonica Group cultiva... | 43929697 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| CP132244.1 | nt | Oryza sativa Japonica Group cultiva... | 23931887 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| KF428978.1 | nt | Oryza rufipogon chloroplast, comple... | 134557 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| LC642244.1 | nt | Oryza nivara CX19 chloroplast DNA, ... | 134502 bp | Oryza nivara | QL-PLN-00-007 | 615 bp | View |
| MZ424305.1 | nt | Oryza sativa cultivar SR86 chloropl... | 134496 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| MZ151337.1 | nt | Oryza glaberrima cultivar RAM3 chlo... | 134602 bp | Oryza glaberrima | QL-PLN-00-007 | 615 bp | View |
| OV049986.1 | nt | Oryza meridionalis genome assembly,... | 134543 bp | Oryza meridionalis | QL-PLN-00-007 | 615 bp | View |
| OV049797.1 | nt | Oryza rufipogon genome assembly, or... | 134536 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049799.1 | nt | Oryza rufipogon genome assembly, or... | 134540 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049801.1 | nt | Oryza rufipogon genome assembly, or... | 134501 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049802.1 | nt | Oryza rufipogon genome assembly, or... | 134517 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049803.1 | nt | Oryza rufipogon genome assembly, or... | 134501 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049804.1 | nt | Oryza rufipogon genome assembly, or... | 134537 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049805.1 | nt | Oryza rufipogon genome assembly, or... | 134582 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049807.1 | nt | Oryza rufipogon genome assembly, or... | 134501 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049817.1 | nt | Oryza rufipogon genome assembly, or... | 134517 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV049818.1 | nt | Oryza rufipogon genome assembly, or... | 134502 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.