Amplicon details |
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Amplicon: |
615 bp | |
1 cgaaatcggt agacgctacg gacttgattg tattgagcct tggtatggaa 51 acctgctaag tggcaacttc caaattcaga gaaaccctgg aattaaaaaa 101 ggggcaatcc tgagccaaat ccatgttttg agaaaacaag cggttctcga 151 actagaaccc aaaggaaaag gataggtgca gagactcaat ggaagctgtt 201 ctaacgaatc gagttaatta cgttgtgttg ctagcggaac tcccttctaa 251 attagggaaa gaagggcttt cgaaatctaa tacacacgta tagatactgg 301 catagcaaac gattaatcac agaactcata tcataatata ggttctttaa 351 ttctttttta aaatgaaaat aggaatgatt atgaaataga aaattcataa 401 tttttttaga attgttgtga atccattcca atcgaatatt gagtaatcaa 451 atccttcaat tcatagtttt cgaaatcttt ttaaaagcgg attaatcgga 501 cgaggataaa gagagagtcc cattctacat gtcaatactg acaacaatga 551 aatttctagt aaaaggaaaa tccgtcgact ttctaagtcg tgagggttca 601 agtccctcta tcccc |
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| Record ID | Database | Record description | Record length | Taxon | Method | Amplicon size | Match details |
|---|---|---|---|---|---|---|---|
| OV050016.1 | nt | Oryza rufipogon genome assembly, or... | 134494 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050038.1 | nt | Oryza rufipogon genome assembly, or... | 134541 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050046.1 | nt | Oryza rufipogon genome assembly, or... | 134494 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050054.1 | nt | Oryza rufipogon genome assembly, or... | 134582 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050062.1 | nt | Oryza rufipogon genome assembly, or... | 134514 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| OV050091.1 | nt | Oryza rufipogon genome assembly, or... | 134553 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| KM881635.1 | nt | Oryza barthii isolate 101381 chloro... | 134603 bp | Oryza barthii | QL-PLN-00-007 | 615 bp | View |
| KM881642.1 | nt | Oryza longistaminata isolate 81953 ... | 134563 bp | Oryza longistaminata | QL-PLN-00-007 | 615 bp | View |
| KM103370.1 | nt | Oryza glaberrima voucher IRGC103937... | 134598 bp | Oryza glaberrima | QL-PLN-00-007 | 615 bp | View |
| KM103372.1 | nt | Oryza rufipogon voucher W1588 chlor... | 134510 bp | Oryza rufipogon | QL-PLN-00-007 | 615 bp | View |
| KM088021.1 | nt | Oryza glaberrima chloroplast, compl... | 134598 bp | Oryza glaberrima | QL-PLN-00-007 | 615 bp | View |
| HG996772.1 | nt | Oryza sativa genome assembly, organ... | 134551 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| GU592208.1 | nt | Oryza meridionalis isolate 300118 c... | 134551 bp | Oryza meridionalis | QL-PLN-00-007 | 615 bp | View |
| AP014957.1 | nt | Oryza sativa Japonica Group DNA, ch... | 43270923 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| AP014966.1 | nt | Oryza sativa Japonica Group DNA, ch... | 23207287 bp | Oryza sativa Japonica Group | QL-PLN-00-007 | 615 bp | View |
| HG996785.1 | nt | Oryza sativa genome assembly, organ... | 134502 bp | Oryza sativa | QL-PLN-00-007 | 615 bp | View |
| MW001303.1 | nt | Oryza sativa temperate japonica sub... | 134556 bp | Oryza sativa temperate japonica subgroup | QL-PLN-00-007 | 615 bp | View |
| CP054688.1 | nt | Oryza sativa Indica Group cultivar ... | 134506 bp | Oryza sativa Indica Group | QL-PLN-00-007 | 615 bp | View |
| CP056052.1 | nt | Oryza sativa Indica Group cultivar ... | 44754788 bp | Oryza sativa Indica Group | QL-PLN-00-007 | 615 bp | View |
| JN861109.1 | nt | Oryza sativa Indica Group cultivar ... | 134448 bp | Oryza sativa Indica Group | QL-PLN-00-007 | 615 bp | View |
Related publications:
Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101.
Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.